Workflow Tree detection

Description

This code base detects and segments trees in a vegetation/canopy height model. It is designed as a fully automatic pipeline.

Process

0. Set Up Environment:

• Python:

  cd tree-detection
  conda create -f tree-detection/env.yml
  conda activate tree-detection
  

Tasks in 1-11 in ./tasks can be executed using the ./main.py script. Copy the sample_config.yaml to config_X.yaml, adapt the settings to your environment and run the file:

1. Prepare Data according to sample_config.yml
2. Adapt columns look-up table to your corresponding data model
3. Run Python